Analysis Result Entities

The Turtle files found in the EMO-BON crates are harvested and aggregated into a triple store, forming a large, interconnected knowledge graph of EMO-BON data.

Analysis Results Entity Diagram

Taxonomy Annotation¶

Taxonomic annotation results from sequence analysis.

• Class:
  prod:TaxonomicAnnotation

• Relationships:

  • Taxonomic annotation → prod:ofSample → Sample

  • Taxonomic annotation → dct:isPartOf → Taxonomy Annotation collection

• URI Pattern:
  {{base}}/analysis-results-{cluster}-crate/{source_mat_id}-ro-crate/taxonomy-summary/{geneticMarker}/{geneticMarker}-taxonomy-summary#{OTU-ID}
  Example:
  https://data.emobon.embrc.eu/analysis-results-cluster-01-crate/EMOBON_AAOT_Wa_42-ro-crate/taxonomy-summary/SSU/SSU-taxonomy-summary#2157

Taxonomy Annotation Collection¶

Collection of taxonomy annotations

• URI Pattern:
  {{base}}/analysis-results-{cluster}-crate/{source_mat_id}-ro-crate/taxonomy-summary/{geneticMarker}/{geneticMarker}-taxonomy-summary
  Example:

• https://data.emobon.embrc.eu/analysis-results-cluster-01-crate/EMOBON_AAOT_Wa_42-ro-crate/taxonomy-summary/SSU/SSU-taxonomy-summary

Functional Annotation¶

Functional annotation results from sequence analysis.

• Class:
  prod:FunctionalAnnotation

• Relationships:

  • Functional annotation → prod:ofSample → Sample

  • Functional annotation → dct:isPartOf → Functional Annotation collection

• URI Pattern:
  {{base}}/analysis-results-{cluster}-crate/{source_mat_id}-ro-crate/functional-annotation/functional-annotation#{rowID}
  Example:
  https://data.emobon.embrc.eu/analysis-results-cluster-01-crate/EMOBON_AAOT_Wa_42-ro-crate/functional-annotation/functional-annotation#GO:0055085

Functional Annotation Collection¶

Collection of functional annotations

• URI Pattern:
  {{base}}/analysis-results-{cluster}-crate/{source_mat_id}-ro-crate/functional-annotation/functional-annotation
  Example:
  https://data.emobon.embrc.eu/analysis-results-cluster-01-crate/EMOBON_AAOT_Wa_42-ro-crate/functional-annotation/functional-annotation